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A 2D graphical representation of the sequences of DNA based on triplets and its application
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| Zeitschriftentitel: | EURASIP Journal on Bioinformatics and Systems Biology |
|---|---|
| Personen und Körperschaften: | , , |
| In: | EURASIP Journal on Bioinformatics and Systems Biology, 2014, 2014, 1 |
| Format: | E-Article |
| Sprache: | Englisch |
| veröffentlicht: |
Springer Science and Business Media LLC
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Zou, Sai Wang, Lei Wang, Junfeng Zou, Sai Wang, Lei Wang, Junfeng |
|---|---|
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Zou, Sai Wang, Lei Wang, Junfeng |
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Zou, Sai Wang, Lei Wang, Junfeng EURASIP Journal on Bioinformatics and Systems Biology A 2D graphical representation of the sequences of DNA based on triplets and its application Computational Mathematics Computer Science Applications General Biochemistry, Genetics and Molecular Biology |
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zou, sai |
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Zou, Sai Wang, Lei Wang, Junfeng 1687-4153 Springer Science and Business Media LLC Computational Mathematics Computer Science Applications General Biochemistry, Genetics and Molecular Biology http://dx.doi.org/10.1186/1687-4153-2014-1 <jats:title>Abstract</jats:title> <jats:p>In this paper, we first present a new concept of ‘weight’ for 64 triplets and define a different weight for each kind of triplet. Then, we give a novel 2D graphical representation for DNA sequences, which can transform a DNA sequence into a plot set to facilitate quantitative comparisons of DNA sequences. Thereafter, associating with a newly designed measure of similarity, we introduce a novel approach to make similarities/dissimilarities analysis of DNA sequences. Finally, the applications in similarities/dissimilarities analysis of the complete coding sequences of β-globin genes of 11 species illustrate the utilities of our newly proposed method.</jats:p> A 2D graphical representation of the sequences of DNA based on triplets and its application EURASIP Journal on Bioinformatics and Systems Biology |
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A 2D graphical representation of the sequences of DNA based on triplets and its application |
| title_unstemmed |
A 2D graphical representation of the sequences of DNA based on triplets and its application |
| title_full |
A 2D graphical representation of the sequences of DNA based on triplets and its application |
| title_fullStr |
A 2D graphical representation of the sequences of DNA based on triplets and its application |
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A 2D graphical representation of the sequences of DNA based on triplets and its application |
| title_short |
A 2D graphical representation of the sequences of DNA based on triplets and its application |
| title_sort |
a 2d graphical representation of the sequences of dna based on triplets and its application |
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Computational Mathematics Computer Science Applications General Biochemistry, Genetics and Molecular Biology |
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http://dx.doi.org/10.1186/1687-4153-2014-1 |
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2014 |
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<jats:title>Abstract</jats:title>
<jats:p>In this paper, we first present a new concept of ‘weight’ for 64 triplets and define a different weight for each kind of triplet. Then, we give a novel 2D graphical representation for DNA sequences, which can transform a DNA sequence into a plot set to facilitate quantitative comparisons of DNA sequences. Thereafter, associating with a newly designed measure of similarity, we introduce a novel approach to make similarities/dissimilarities analysis of DNA sequences. Finally, the applications in similarities/dissimilarities analysis of the complete coding sequences of β-globin genes of 11 species illustrate the utilities of our newly proposed method.</jats:p> |
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| description | <jats:title>Abstract</jats:title> <jats:p>In this paper, we first present a new concept of ‘weight’ for 64 triplets and define a different weight for each kind of triplet. Then, we give a novel 2D graphical representation for DNA sequences, which can transform a DNA sequence into a plot set to facilitate quantitative comparisons of DNA sequences. Thereafter, associating with a newly designed measure of similarity, we introduce a novel approach to make similarities/dissimilarities analysis of DNA sequences. Finally, the applications in similarities/dissimilarities analysis of the complete coding sequences of β-globin genes of 11 species illustrate the utilities of our newly proposed method.</jats:p> |
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| spelling | Zou, Sai Wang, Lei Wang, Junfeng 1687-4153 Springer Science and Business Media LLC Computational Mathematics Computer Science Applications General Biochemistry, Genetics and Molecular Biology http://dx.doi.org/10.1186/1687-4153-2014-1 <jats:title>Abstract</jats:title> <jats:p>In this paper, we first present a new concept of ‘weight’ for 64 triplets and define a different weight for each kind of triplet. Then, we give a novel 2D graphical representation for DNA sequences, which can transform a DNA sequence into a plot set to facilitate quantitative comparisons of DNA sequences. Thereafter, associating with a newly designed measure of similarity, we introduce a novel approach to make similarities/dissimilarities analysis of DNA sequences. Finally, the applications in similarities/dissimilarities analysis of the complete coding sequences of β-globin genes of 11 species illustrate the utilities of our newly proposed method.</jats:p> A 2D graphical representation of the sequences of DNA based on triplets and its application EURASIP Journal on Bioinformatics and Systems Biology |
| spellingShingle | Zou, Sai, Wang, Lei, Wang, Junfeng, EURASIP Journal on Bioinformatics and Systems Biology, A 2D graphical representation of the sequences of DNA based on triplets and its application, Computational Mathematics, Computer Science Applications, General Biochemistry, Genetics and Molecular Biology |
| title | A 2D graphical representation of the sequences of DNA based on triplets and its application |
| title_full | A 2D graphical representation of the sequences of DNA based on triplets and its application |
| title_fullStr | A 2D graphical representation of the sequences of DNA based on triplets and its application |
| title_full_unstemmed | A 2D graphical representation of the sequences of DNA based on triplets and its application |
| title_short | A 2D graphical representation of the sequences of DNA based on triplets and its application |
| title_sort | a 2d graphical representation of the sequences of dna based on triplets and its application |
| title_unstemmed | A 2D graphical representation of the sequences of DNA based on triplets and its application |
| topic | Computational Mathematics, Computer Science Applications, General Biochemistry, Genetics and Molecular Biology |
| url | http://dx.doi.org/10.1186/1687-4153-2014-1 |