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Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways inStreptomyces coelicolorusing DNA microarrays
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| Zeitschriftentitel: | Genes & Development |
|---|---|
| Personen und Körperschaften: | , , , |
| In: | Genes & Development, 15, 2001, 23, S. 3183-3192 |
| Format: | E-Article |
| Sprache: | Englisch |
| veröffentlicht: |
Cold Spring Harbor Laboratory
|
| Schlagwörter: |
| author_facet |
Huang, Jianqiang Lih, Chih-Jian Pan, Kuang-Hung Cohen, Stanley N. Huang, Jianqiang Lih, Chih-Jian Pan, Kuang-Hung Cohen, Stanley N. |
|---|---|
| author |
Huang, Jianqiang Lih, Chih-Jian Pan, Kuang-Hung Cohen, Stanley N. |
| spellingShingle |
Huang, Jianqiang Lih, Chih-Jian Pan, Kuang-Hung Cohen, Stanley N. Genes & Development Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways inStreptomyces coelicolorusing DNA microarrays Developmental Biology Genetics |
| author_sort |
huang, jianqiang |
| spelling |
Huang, Jianqiang Lih, Chih-Jian Pan, Kuang-Hung Cohen, Stanley N. 0890-9369 1549-5477 Cold Spring Harbor Laboratory Developmental Biology Genetics http://dx.doi.org/10.1101/gad.943401 <jats:p>The eubacterial species<jats:italic>Streptomyces coelicolor</jats:italic>proceeds through a complex growth cycle in which morphological differentiation/development is associated with a transition from primary to secondary metabolism and the production of antibiotics. We used DNA microarrays and mutational analysis to investigate the expression of individual genes and multigene antibiotic biosynthetic pathways during these events. We identified expression patterns in biosynthetic, regulatory, and ribosomal protein genes that were associated highly specifically with particular stages of development. A knowledge-based algorithm that correlates temporal changes in expression with chromosomal position identified groups of contiguous genes expressed at discrete stages of morphological development, inferred the boundaries of known antibiotic synthesis gene loci, and revealed novel physical clusters of coordinately regulated genes. Microarray analysis of RNA from cells mutated in genes regulating synthesis of the antibiotics actinorhodin (Act) and undecylprodigiosin (Red) identified proximate and distant sites that contain putative ABC transporter and two-component system genes expressed coordinately with genes of specific biosynthetic pathways and indicated the existence of two functionally and physically discrete regulons in the Red pathway.</jats:p> Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways in<i>Streptomyces coelicolor</i>using DNA microarrays Genes & Development |
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Cold Spring Harbor Laboratory, 2001 |
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Cold Spring Harbor Laboratory, 2001 |
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| title |
Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways inStreptomyces coelicolorusing DNA microarrays |
| title_unstemmed |
Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways inStreptomyces coelicolorusing DNA microarrays |
| title_full |
Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways inStreptomyces coelicolorusing DNA microarrays |
| title_fullStr |
Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways inStreptomyces coelicolorusing DNA microarrays |
| title_full_unstemmed |
Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways inStreptomyces coelicolorusing DNA microarrays |
| title_short |
Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways inStreptomyces coelicolorusing DNA microarrays |
| title_sort |
global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways in<i>streptomyces coelicolor</i>using dna microarrays |
| topic |
Developmental Biology Genetics |
| url |
http://dx.doi.org/10.1101/gad.943401 |
| publishDate |
2001 |
| physical |
3183-3192 |
| description |
<jats:p>The eubacterial species<jats:italic>Streptomyces coelicolor</jats:italic>proceeds through a complex growth cycle in which morphological differentiation/development is associated with a transition from primary to secondary metabolism and the production of antibiotics. We used DNA microarrays and mutational analysis to investigate the expression of individual genes and multigene antibiotic biosynthetic pathways during these events. We identified expression patterns in biosynthetic, regulatory, and ribosomal protein genes that were associated highly specifically with particular stages of development. A knowledge-based algorithm that correlates temporal changes in expression with chromosomal position identified groups of contiguous genes expressed at discrete stages of morphological development, inferred the boundaries of known antibiotic synthesis gene loci, and revealed novel physical clusters of coordinately regulated genes. Microarray analysis of RNA from cells mutated in genes regulating synthesis of the antibiotics actinorhodin (Act) and undecylprodigiosin (Red) identified proximate and distant sites that contain putative ABC transporter and two-component system genes expressed coordinately with genes of specific biosynthetic pathways and indicated the existence of two functionally and physically discrete regulons in the Red pathway.</jats:p> |
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| author | Huang, Jianqiang, Lih, Chih-Jian, Pan, Kuang-Hung, Cohen, Stanley N. |
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| description | <jats:p>The eubacterial species<jats:italic>Streptomyces coelicolor</jats:italic>proceeds through a complex growth cycle in which morphological differentiation/development is associated with a transition from primary to secondary metabolism and the production of antibiotics. We used DNA microarrays and mutational analysis to investigate the expression of individual genes and multigene antibiotic biosynthetic pathways during these events. We identified expression patterns in biosynthetic, regulatory, and ribosomal protein genes that were associated highly specifically with particular stages of development. A knowledge-based algorithm that correlates temporal changes in expression with chromosomal position identified groups of contiguous genes expressed at discrete stages of morphological development, inferred the boundaries of known antibiotic synthesis gene loci, and revealed novel physical clusters of coordinately regulated genes. Microarray analysis of RNA from cells mutated in genes regulating synthesis of the antibiotics actinorhodin (Act) and undecylprodigiosin (Red) identified proximate and distant sites that contain putative ABC transporter and two-component system genes expressed coordinately with genes of specific biosynthetic pathways and indicated the existence of two functionally and physically discrete regulons in the Red pathway.</jats:p> |
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| institution | DE-D275, DE-Bn3, DE-Brt1, DE-Zwi2, DE-D161, DE-Gla1, DE-Zi4, DE-15, DE-Pl11, DE-Rs1, DE-105, DE-14, DE-Ch1, DE-L229 |
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| spelling | Huang, Jianqiang Lih, Chih-Jian Pan, Kuang-Hung Cohen, Stanley N. 0890-9369 1549-5477 Cold Spring Harbor Laboratory Developmental Biology Genetics http://dx.doi.org/10.1101/gad.943401 <jats:p>The eubacterial species<jats:italic>Streptomyces coelicolor</jats:italic>proceeds through a complex growth cycle in which morphological differentiation/development is associated with a transition from primary to secondary metabolism and the production of antibiotics. We used DNA microarrays and mutational analysis to investigate the expression of individual genes and multigene antibiotic biosynthetic pathways during these events. We identified expression patterns in biosynthetic, regulatory, and ribosomal protein genes that were associated highly specifically with particular stages of development. A knowledge-based algorithm that correlates temporal changes in expression with chromosomal position identified groups of contiguous genes expressed at discrete stages of morphological development, inferred the boundaries of known antibiotic synthesis gene loci, and revealed novel physical clusters of coordinately regulated genes. Microarray analysis of RNA from cells mutated in genes regulating synthesis of the antibiotics actinorhodin (Act) and undecylprodigiosin (Red) identified proximate and distant sites that contain putative ABC transporter and two-component system genes expressed coordinately with genes of specific biosynthetic pathways and indicated the existence of two functionally and physically discrete regulons in the Red pathway.</jats:p> Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways in<i>Streptomyces coelicolor</i>using DNA microarrays Genes & Development |
| spellingShingle | Huang, Jianqiang, Lih, Chih-Jian, Pan, Kuang-Hung, Cohen, Stanley N., Genes & Development, Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways inStreptomyces coelicolorusing DNA microarrays, Developmental Biology, Genetics |
| title | Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways inStreptomyces coelicolorusing DNA microarrays |
| title_full | Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways inStreptomyces coelicolorusing DNA microarrays |
| title_fullStr | Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways inStreptomyces coelicolorusing DNA microarrays |
| title_full_unstemmed | Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways inStreptomyces coelicolorusing DNA microarrays |
| title_short | Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways inStreptomyces coelicolorusing DNA microarrays |
| title_sort | global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways in<i>streptomyces coelicolor</i>using dna microarrays |
| title_unstemmed | Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways inStreptomyces coelicolorusing DNA microarrays |
| topic | Developmental Biology, Genetics |
| url | http://dx.doi.org/10.1101/gad.943401 |