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Coevolution ofaah: Adps-Like Gene with the Host Bacterium Revealed by Comparative Genomic Analysis
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| Zeitschriftentitel: | The Scientific World Journal |
|---|---|
| Personen und Körperschaften: | , , , |
| In: | The Scientific World Journal, 2012, 2012, S. 1-9 |
| Format: | E-Article |
| Sprache: | Englisch |
| veröffentlicht: |
Hindawi Limited
|
| Schlagwörter: |
| author_facet |
Ping, Liyan Platzer, Matthias Wen, Gaiping Delaroque, Nicolas Ping, Liyan Platzer, Matthias Wen, Gaiping Delaroque, Nicolas |
|---|---|
| author |
Ping, Liyan Platzer, Matthias Wen, Gaiping Delaroque, Nicolas |
| spellingShingle |
Ping, Liyan Platzer, Matthias Wen, Gaiping Delaroque, Nicolas The Scientific World Journal Coevolution ofaah: Adps-Like Gene with the Host Bacterium Revealed by Comparative Genomic Analysis General Environmental Science General Biochemistry, Genetics and Molecular Biology General Medicine |
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ping, liyan |
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Ping, Liyan Platzer, Matthias Wen, Gaiping Delaroque, Nicolas 1537-744X Hindawi Limited General Environmental Science General Biochemistry, Genetics and Molecular Biology General Medicine http://dx.doi.org/10.1100/2012/504905 <jats:p>A protein named AAH was isolated from the bacterium<jats:italic>Microbacterium arborescens</jats:italic>SE14, a gut commensal of the lepidopteran larvae. It showed not only a high sequence similarity to Dps-like proteins (DNA-binding proteins from starved cell) but also reversible hydrolase activity. A comparative genomic analysis was performed to gain more insights into its evolution. The GC profile of the<jats:italic>aah</jats:italic>gene indicated that it was evolved from a low GC ancestor. Its stop codon usage was also different from the general pattern of Actinobacterial genomes. The phylogeny of<jats:italic>dps</jats:italic>-like proteins showed strong correlation with the phylogeny of host bacteria. A conserved genomic synteny was identified in some taxonomically related Actinobacteria, suggesting that the ancestor genes had incorporated into the genome before the divergence of Micrococcineae from other families. The<jats:italic>aah</jats:italic>gene had evolved new function but still retained the typical dodecameric structure.</jats:p> Coevolution of<i>aah</i>: A<i>dps</i>-Like Gene with the Host Bacterium Revealed by Comparative Genomic Analysis The Scientific World Journal |
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| title |
Coevolution ofaah: Adps-Like Gene with the Host Bacterium Revealed by Comparative Genomic Analysis |
| title_unstemmed |
Coevolution ofaah: Adps-Like Gene with the Host Bacterium Revealed by Comparative Genomic Analysis |
| title_full |
Coevolution ofaah: Adps-Like Gene with the Host Bacterium Revealed by Comparative Genomic Analysis |
| title_fullStr |
Coevolution ofaah: Adps-Like Gene with the Host Bacterium Revealed by Comparative Genomic Analysis |
| title_full_unstemmed |
Coevolution ofaah: Adps-Like Gene with the Host Bacterium Revealed by Comparative Genomic Analysis |
| title_short |
Coevolution ofaah: Adps-Like Gene with the Host Bacterium Revealed by Comparative Genomic Analysis |
| title_sort |
coevolution of<i>aah</i>: a<i>dps</i>-like gene with the host bacterium revealed by comparative genomic analysis |
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General Environmental Science General Biochemistry, Genetics and Molecular Biology General Medicine |
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http://dx.doi.org/10.1100/2012/504905 |
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2012 |
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1-9 |
| description |
<jats:p>A protein named AAH was isolated from the bacterium<jats:italic>Microbacterium arborescens</jats:italic>SE14, a gut commensal of the lepidopteran larvae. It showed not only a high sequence similarity to Dps-like proteins (DNA-binding proteins from starved cell) but also reversible hydrolase activity. A comparative genomic analysis was performed to gain more insights into its evolution. The GC profile of the<jats:italic>aah</jats:italic>gene indicated that it was evolved from a low GC ancestor. Its stop codon usage was also different from the general pattern of Actinobacterial genomes. The phylogeny of<jats:italic>dps</jats:italic>-like proteins showed strong correlation with the phylogeny of host bacteria. A conserved genomic synteny was identified in some taxonomically related Actinobacteria, suggesting that the ancestor genes had incorporated into the genome before the divergence of Micrococcineae from other families. The<jats:italic>aah</jats:italic>gene had evolved new function but still retained the typical dodecameric structure.</jats:p> |
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| author | Ping, Liyan, Platzer, Matthias, Wen, Gaiping, Delaroque, Nicolas |
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| description | <jats:p>A protein named AAH was isolated from the bacterium<jats:italic>Microbacterium arborescens</jats:italic>SE14, a gut commensal of the lepidopteran larvae. It showed not only a high sequence similarity to Dps-like proteins (DNA-binding proteins from starved cell) but also reversible hydrolase activity. A comparative genomic analysis was performed to gain more insights into its evolution. The GC profile of the<jats:italic>aah</jats:italic>gene indicated that it was evolved from a low GC ancestor. Its stop codon usage was also different from the general pattern of Actinobacterial genomes. The phylogeny of<jats:italic>dps</jats:italic>-like proteins showed strong correlation with the phylogeny of host bacteria. A conserved genomic synteny was identified in some taxonomically related Actinobacteria, suggesting that the ancestor genes had incorporated into the genome before the divergence of Micrococcineae from other families. The<jats:italic>aah</jats:italic>gene had evolved new function but still retained the typical dodecameric structure.</jats:p> |
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| spelling | Ping, Liyan Platzer, Matthias Wen, Gaiping Delaroque, Nicolas 1537-744X Hindawi Limited General Environmental Science General Biochemistry, Genetics and Molecular Biology General Medicine http://dx.doi.org/10.1100/2012/504905 <jats:p>A protein named AAH was isolated from the bacterium<jats:italic>Microbacterium arborescens</jats:italic>SE14, a gut commensal of the lepidopteran larvae. It showed not only a high sequence similarity to Dps-like proteins (DNA-binding proteins from starved cell) but also reversible hydrolase activity. A comparative genomic analysis was performed to gain more insights into its evolution. The GC profile of the<jats:italic>aah</jats:italic>gene indicated that it was evolved from a low GC ancestor. Its stop codon usage was also different from the general pattern of Actinobacterial genomes. The phylogeny of<jats:italic>dps</jats:italic>-like proteins showed strong correlation with the phylogeny of host bacteria. A conserved genomic synteny was identified in some taxonomically related Actinobacteria, suggesting that the ancestor genes had incorporated into the genome before the divergence of Micrococcineae from other families. The<jats:italic>aah</jats:italic>gene had evolved new function but still retained the typical dodecameric structure.</jats:p> Coevolution of<i>aah</i>: A<i>dps</i>-Like Gene with the Host Bacterium Revealed by Comparative Genomic Analysis The Scientific World Journal |
| spellingShingle | Ping, Liyan, Platzer, Matthias, Wen, Gaiping, Delaroque, Nicolas, The Scientific World Journal, Coevolution ofaah: Adps-Like Gene with the Host Bacterium Revealed by Comparative Genomic Analysis, General Environmental Science, General Biochemistry, Genetics and Molecular Biology, General Medicine |
| title | Coevolution ofaah: Adps-Like Gene with the Host Bacterium Revealed by Comparative Genomic Analysis |
| title_full | Coevolution ofaah: Adps-Like Gene with the Host Bacterium Revealed by Comparative Genomic Analysis |
| title_fullStr | Coevolution ofaah: Adps-Like Gene with the Host Bacterium Revealed by Comparative Genomic Analysis |
| title_full_unstemmed | Coevolution ofaah: Adps-Like Gene with the Host Bacterium Revealed by Comparative Genomic Analysis |
| title_short | Coevolution ofaah: Adps-Like Gene with the Host Bacterium Revealed by Comparative Genomic Analysis |
| title_sort | coevolution of<i>aah</i>: a<i>dps</i>-like gene with the host bacterium revealed by comparative genomic analysis |
| title_unstemmed | Coevolution ofaah: Adps-Like Gene with the Host Bacterium Revealed by Comparative Genomic Analysis |
| topic | General Environmental Science, General Biochemistry, Genetics and Molecular Biology, General Medicine |
| url | http://dx.doi.org/10.1100/2012/504905 |