Eintrag weiter verarbeiten
2575. Dramatic Time-Dependent Changes of Bacterial and Fungal Taxonomic Signatures in 4 Body Regions of ICU Patients
Gespeichert in:
| Zeitschriftentitel: | Open Forum Infectious Diseases |
|---|---|
| Personen und Körperschaften: | , , , , , , , |
| In: | Open Forum Infectious Diseases, 6, 2019, Supplement_2, S. S895-S895 |
| Format: | E-Article |
| Sprache: | Englisch |
| veröffentlicht: |
Oxford University Press (OUP)
|
| Schlagwörter: |
| author_facet |
Wurm, Philipp Halwachs-Wenzl, Bettina Kashofer, Karl von Lewinski, Dirk Eisner, Florian Krause, Robert Gorkiewicz, Gregor Hoegenauer, Christoph Wurm, Philipp Halwachs-Wenzl, Bettina Kashofer, Karl von Lewinski, Dirk Eisner, Florian Krause, Robert Gorkiewicz, Gregor Hoegenauer, Christoph |
|---|---|
| author |
Wurm, Philipp Halwachs-Wenzl, Bettina Kashofer, Karl von Lewinski, Dirk Eisner, Florian Krause, Robert Gorkiewicz, Gregor Hoegenauer, Christoph |
| spellingShingle |
Wurm, Philipp Halwachs-Wenzl, Bettina Kashofer, Karl von Lewinski, Dirk Eisner, Florian Krause, Robert Gorkiewicz, Gregor Hoegenauer, Christoph Open Forum Infectious Diseases 2575. Dramatic Time-Dependent Changes of Bacterial and Fungal Taxonomic Signatures in 4 Body Regions of ICU Patients Infectious Diseases Oncology |
| author_sort |
wurm, philipp |
| spelling |
Wurm, Philipp Halwachs-Wenzl, Bettina Kashofer, Karl von Lewinski, Dirk Eisner, Florian Krause, Robert Gorkiewicz, Gregor Hoegenauer, Christoph 2328-8957 Oxford University Press (OUP) Infectious Diseases Oncology http://dx.doi.org/10.1093/ofid/ofz360.2253 <jats:title>Abstract</jats:title> <jats:sec> <jats:title>Background</jats:title> <jats:p>It has been hypothesized that intensive care unit (ICU)-related complications like nosocomial pneumonia or gastrointestinal dysfunction are associated with disturbances of normal host microorganisms. However, these alterations are largely unknown in ICU patients. The bacterio- and mycobiota in 4 body regions in 14 ICU patients was investigated after admission until death or discharge to other wards.</jats:p> </jats:sec> <jats:sec> <jats:title>Methods</jats:title> <jats:p>Medical ICU patients were sampled with pharyngeal swabs, endotracheal aspirates, gastric secretions and stools or rectal swabs (in constipated patients). V1-V2 (16S rRNA gene) and eukaryoitic ITS sequencing was performed as previously described as well as denoizing, transformation into amplicon sequence variants and analysis using qiime2 and LEfSe (LDA Score > 3.0, P-value < 0.05). For sequence classification databases SILVA 132 (16S) and UNITE version 7.2 (ITS) were used.</jats:p> </jats:sec> <jats:sec> <jats:title>Results</jats:title> <jats:p>Samples were obtained at multiple time points from day 1 up to day 47 with a median of 11 samples per patient (range 2 to 17). In 11 patients all intended body regions were sampled (stool was missing in two patients and gastric secretion in two patients). The length of ICU stay and number of antibiotics administered during ICU stay was associated with loss of diversity in all investigated body sites. Taxonomic profiling showed a significant reduction of physiological members from the oral and fecal microbial community (e.g., Clostridiales, Bacteroidales, Faecalibacterium spp. etc.) after 2 weeks at the ICU. In contrast, Enterococcus spp. and Staphylococcus spp. were enriched in the gastric and fecal microbiota. Candida spp. dominated fungal communities of all body sites investigated. Staphylococcus aureus was associated with ITS positive, Candida spp. dominated samples throughout all body sites, while Pseudomonas aeruginosa was associated with ITS-negative samples.</jats:p> </jats:sec> <jats:sec> <jats:title>Conclusion</jats:title> <jats:p>The length of the ICU stay and the number of different antibiotics administered during the stay at the ICU are associated with severe intestinal dysbiosis, determined by loss of physiological microbes, decreased bacterial richness and domination of low-diversity fecal microbiota. Early colonization of Candida spp. might favor a co-existance of a Staphylococcus spp.-dominated microbiota in the ICU.</jats:p> </jats:sec> <jats:sec> <jats:title>Disclosures</jats:title> <jats:p>All authors: No reported disclosures.</jats:p> </jats:sec> 2575. Dramatic Time-Dependent Changes of Bacterial and Fungal Taxonomic Signatures in 4 Body Regions of ICU Patients Open Forum Infectious Diseases |
| doi_str_mv |
10.1093/ofid/ofz360.2253 |
| facet_avail |
Online Free |
| finc_class_facet |
Medizin |
| format |
ElectronicArticle |
| fullrecord |
blob:ai-49-aHR0cDovL2R4LmRvaS5vcmcvMTAuMTA5My9vZmlkL29mejM2MC4yMjUz |
| id |
ai-49-aHR0cDovL2R4LmRvaS5vcmcvMTAuMTA5My9vZmlkL29mejM2MC4yMjUz |
| institution |
DE-D275 DE-Bn3 DE-Brt1 DE-Zwi2 DE-D161 DE-Gla1 DE-Zi4 DE-15 DE-Pl11 DE-Rs1 DE-105 DE-14 DE-Ch1 DE-L229 |
| imprint |
Oxford University Press (OUP), 2019 |
| imprint_str_mv |
Oxford University Press (OUP), 2019 |
| issn |
2328-8957 |
| issn_str_mv |
2328-8957 |
| language |
English |
| mega_collection |
Oxford University Press (OUP) (CrossRef) |
| match_str |
wurm20192575dramatictimedependentchangesofbacterialandfungaltaxonomicsignaturesin4bodyregionsoficupatients |
| publishDateSort |
2019 |
| publisher |
Oxford University Press (OUP) |
| recordtype |
ai |
| record_format |
ai |
| series |
Open Forum Infectious Diseases |
| source_id |
49 |
| title |
2575. Dramatic Time-Dependent Changes of Bacterial and Fungal Taxonomic Signatures in 4 Body Regions of ICU Patients |
| title_unstemmed |
2575. Dramatic Time-Dependent Changes of Bacterial and Fungal Taxonomic Signatures in 4 Body Regions of ICU Patients |
| title_full |
2575. Dramatic Time-Dependent Changes of Bacterial and Fungal Taxonomic Signatures in 4 Body Regions of ICU Patients |
| title_fullStr |
2575. Dramatic Time-Dependent Changes of Bacterial and Fungal Taxonomic Signatures in 4 Body Regions of ICU Patients |
| title_full_unstemmed |
2575. Dramatic Time-Dependent Changes of Bacterial and Fungal Taxonomic Signatures in 4 Body Regions of ICU Patients |
| title_short |
2575. Dramatic Time-Dependent Changes of Bacterial and Fungal Taxonomic Signatures in 4 Body Regions of ICU Patients |
| title_sort |
2575. dramatic time-dependent changes of bacterial and fungal taxonomic signatures in 4 body regions of icu patients |
| topic |
Infectious Diseases Oncology |
| url |
http://dx.doi.org/10.1093/ofid/ofz360.2253 |
| publishDate |
2019 |
| physical |
S895-S895 |
| description |
<jats:title>Abstract</jats:title>
<jats:sec>
<jats:title>Background</jats:title>
<jats:p>It has been hypothesized that intensive care unit (ICU)-related complications like nosocomial pneumonia or gastrointestinal dysfunction are associated with disturbances of normal host microorganisms. However, these alterations are largely unknown in ICU patients. The bacterio- and mycobiota in 4 body regions in 14 ICU patients was investigated after admission until death or discharge to other wards.</jats:p>
</jats:sec>
<jats:sec>
<jats:title>Methods</jats:title>
<jats:p>Medical ICU patients were sampled with pharyngeal swabs, endotracheal aspirates, gastric secretions and stools or rectal swabs (in constipated patients). V1-V2 (16S rRNA gene) and eukaryoitic ITS sequencing was performed as previously described as well as denoizing, transformation into amplicon sequence variants and analysis using qiime2 and LEfSe (LDA Score > 3.0, P-value < 0.05). For sequence classification databases SILVA 132 (16S) and UNITE version 7.2 (ITS) were used.</jats:p>
</jats:sec>
<jats:sec>
<jats:title>Results</jats:title>
<jats:p>Samples were obtained at multiple time points from day 1 up to day 47 with a median of 11 samples per patient (range 2 to 17). In 11 patients all intended body regions were sampled (stool was missing in two patients and gastric secretion in two patients). The length of ICU stay and number of antibiotics administered during ICU stay was associated with loss of diversity in all investigated body sites. Taxonomic profiling showed a significant reduction of physiological members from the oral and fecal microbial community (e.g., Clostridiales, Bacteroidales, Faecalibacterium spp. etc.) after 2 weeks at the ICU. In contrast, Enterococcus spp. and Staphylococcus spp. were enriched in the gastric and fecal microbiota. Candida spp. dominated fungal communities of all body sites investigated. Staphylococcus aureus was associated with ITS positive, Candida spp. dominated samples throughout all body sites, while Pseudomonas aeruginosa was associated with ITS-negative samples.</jats:p>
</jats:sec>
<jats:sec>
<jats:title>Conclusion</jats:title>
<jats:p>The length of the ICU stay and the number of different antibiotics administered during the stay at the ICU are associated with severe intestinal dysbiosis, determined by loss of physiological microbes, decreased bacterial richness and domination of low-diversity fecal microbiota. Early colonization of Candida spp. might favor a co-existance of a Staphylococcus spp.-dominated microbiota in the ICU.</jats:p>
</jats:sec>
<jats:sec>
<jats:title>Disclosures</jats:title>
<jats:p>All authors: No reported disclosures.</jats:p>
</jats:sec> |
| container_issue |
Supplement_2 |
| container_start_page |
0 |
| container_title |
Open Forum Infectious Diseases |
| container_volume |
6 |
| format_de105 |
Article, E-Article |
| format_de14 |
Article, E-Article |
| format_de15 |
Article, E-Article |
| format_de520 |
Article, E-Article |
| format_de540 |
Article, E-Article |
| format_dech1 |
Article, E-Article |
| format_ded117 |
Article, E-Article |
| format_degla1 |
E-Article |
| format_del152 |
Buch |
| format_del189 |
Article, E-Article |
| format_dezi4 |
Article |
| format_dezwi2 |
Article, E-Article |
| format_finc |
Article, E-Article |
| format_nrw |
Article, E-Article |
| _version_ |
1792326621902929933 |
| geogr_code |
not assigned |
| last_indexed |
2024-03-01T12:24:12.874Z |
| geogr_code_person |
not assigned |
| openURL |
url_ver=Z39.88-2004&ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fvufind.svn.sourceforge.net%3Agenerator&rft.title=2575.+Dramatic+Time-Dependent+Changes+of+Bacterial+and+Fungal+Taxonomic+Signatures+in+4+Body+Regions+of+ICU+Patients&rft.date=2019-10-23&genre=article&issn=2328-8957&volume=6&issue=Supplement_2&pages=S895-S895&jtitle=Open+Forum+Infectious+Diseases&atitle=2575.+Dramatic+Time-Dependent+Changes+of+Bacterial+and+Fungal+Taxonomic+Signatures+in+4+Body+Regions+of+ICU+Patients&aulast=Hoegenauer&aufirst=Christoph&rft_id=info%3Adoi%2F10.1093%2Fofid%2Fofz360.2253&rft.language%5B0%5D=eng |
| SOLR | |
| _version_ | 1792326621902929933 |
| author | Wurm, Philipp, Halwachs-Wenzl, Bettina, Kashofer, Karl, von Lewinski, Dirk, Eisner, Florian, Krause, Robert, Gorkiewicz, Gregor, Hoegenauer, Christoph |
| author_facet | Wurm, Philipp, Halwachs-Wenzl, Bettina, Kashofer, Karl, von Lewinski, Dirk, Eisner, Florian, Krause, Robert, Gorkiewicz, Gregor, Hoegenauer, Christoph, Wurm, Philipp, Halwachs-Wenzl, Bettina, Kashofer, Karl, von Lewinski, Dirk, Eisner, Florian, Krause, Robert, Gorkiewicz, Gregor, Hoegenauer, Christoph |
| author_sort | wurm, philipp |
| container_issue | Supplement_2 |
| container_start_page | 0 |
| container_title | Open Forum Infectious Diseases |
| container_volume | 6 |
| description | <jats:title>Abstract</jats:title> <jats:sec> <jats:title>Background</jats:title> <jats:p>It has been hypothesized that intensive care unit (ICU)-related complications like nosocomial pneumonia or gastrointestinal dysfunction are associated with disturbances of normal host microorganisms. However, these alterations are largely unknown in ICU patients. The bacterio- and mycobiota in 4 body regions in 14 ICU patients was investigated after admission until death or discharge to other wards.</jats:p> </jats:sec> <jats:sec> <jats:title>Methods</jats:title> <jats:p>Medical ICU patients were sampled with pharyngeal swabs, endotracheal aspirates, gastric secretions and stools or rectal swabs (in constipated patients). V1-V2 (16S rRNA gene) and eukaryoitic ITS sequencing was performed as previously described as well as denoizing, transformation into amplicon sequence variants and analysis using qiime2 and LEfSe (LDA Score > 3.0, P-value < 0.05). For sequence classification databases SILVA 132 (16S) and UNITE version 7.2 (ITS) were used.</jats:p> </jats:sec> <jats:sec> <jats:title>Results</jats:title> <jats:p>Samples were obtained at multiple time points from day 1 up to day 47 with a median of 11 samples per patient (range 2 to 17). In 11 patients all intended body regions were sampled (stool was missing in two patients and gastric secretion in two patients). The length of ICU stay and number of antibiotics administered during ICU stay was associated with loss of diversity in all investigated body sites. Taxonomic profiling showed a significant reduction of physiological members from the oral and fecal microbial community (e.g., Clostridiales, Bacteroidales, Faecalibacterium spp. etc.) after 2 weeks at the ICU. In contrast, Enterococcus spp. and Staphylococcus spp. were enriched in the gastric and fecal microbiota. Candida spp. dominated fungal communities of all body sites investigated. Staphylococcus aureus was associated with ITS positive, Candida spp. dominated samples throughout all body sites, while Pseudomonas aeruginosa was associated with ITS-negative samples.</jats:p> </jats:sec> <jats:sec> <jats:title>Conclusion</jats:title> <jats:p>The length of the ICU stay and the number of different antibiotics administered during the stay at the ICU are associated with severe intestinal dysbiosis, determined by loss of physiological microbes, decreased bacterial richness and domination of low-diversity fecal microbiota. Early colonization of Candida spp. might favor a co-existance of a Staphylococcus spp.-dominated microbiota in the ICU.</jats:p> </jats:sec> <jats:sec> <jats:title>Disclosures</jats:title> <jats:p>All authors: No reported disclosures.</jats:p> </jats:sec> |
| doi_str_mv | 10.1093/ofid/ofz360.2253 |
| facet_avail | Online, Free |
| finc_class_facet | Medizin |
| format | ElectronicArticle |
| format_de105 | Article, E-Article |
| format_de14 | Article, E-Article |
| format_de15 | Article, E-Article |
| format_de520 | Article, E-Article |
| format_de540 | Article, E-Article |
| format_dech1 | Article, E-Article |
| format_ded117 | Article, E-Article |
| format_degla1 | E-Article |
| format_del152 | Buch |
| format_del189 | Article, E-Article |
| format_dezi4 | Article |
| format_dezwi2 | Article, E-Article |
| format_finc | Article, E-Article |
| format_nrw | Article, E-Article |
| geogr_code | not assigned |
| geogr_code_person | not assigned |
| id | ai-49-aHR0cDovL2R4LmRvaS5vcmcvMTAuMTA5My9vZmlkL29mejM2MC4yMjUz |
| imprint | Oxford University Press (OUP), 2019 |
| imprint_str_mv | Oxford University Press (OUP), 2019 |
| institution | DE-D275, DE-Bn3, DE-Brt1, DE-Zwi2, DE-D161, DE-Gla1, DE-Zi4, DE-15, DE-Pl11, DE-Rs1, DE-105, DE-14, DE-Ch1, DE-L229 |
| issn | 2328-8957 |
| issn_str_mv | 2328-8957 |
| language | English |
| last_indexed | 2024-03-01T12:24:12.874Z |
| match_str | wurm20192575dramatictimedependentchangesofbacterialandfungaltaxonomicsignaturesin4bodyregionsoficupatients |
| mega_collection | Oxford University Press (OUP) (CrossRef) |
| physical | S895-S895 |
| publishDate | 2019 |
| publishDateSort | 2019 |
| publisher | Oxford University Press (OUP) |
| record_format | ai |
| recordtype | ai |
| series | Open Forum Infectious Diseases |
| source_id | 49 |
| spelling | Wurm, Philipp Halwachs-Wenzl, Bettina Kashofer, Karl von Lewinski, Dirk Eisner, Florian Krause, Robert Gorkiewicz, Gregor Hoegenauer, Christoph 2328-8957 Oxford University Press (OUP) Infectious Diseases Oncology http://dx.doi.org/10.1093/ofid/ofz360.2253 <jats:title>Abstract</jats:title> <jats:sec> <jats:title>Background</jats:title> <jats:p>It has been hypothesized that intensive care unit (ICU)-related complications like nosocomial pneumonia or gastrointestinal dysfunction are associated with disturbances of normal host microorganisms. However, these alterations are largely unknown in ICU patients. The bacterio- and mycobiota in 4 body regions in 14 ICU patients was investigated after admission until death or discharge to other wards.</jats:p> </jats:sec> <jats:sec> <jats:title>Methods</jats:title> <jats:p>Medical ICU patients were sampled with pharyngeal swabs, endotracheal aspirates, gastric secretions and stools or rectal swabs (in constipated patients). V1-V2 (16S rRNA gene) and eukaryoitic ITS sequencing was performed as previously described as well as denoizing, transformation into amplicon sequence variants and analysis using qiime2 and LEfSe (LDA Score > 3.0, P-value < 0.05). For sequence classification databases SILVA 132 (16S) and UNITE version 7.2 (ITS) were used.</jats:p> </jats:sec> <jats:sec> <jats:title>Results</jats:title> <jats:p>Samples were obtained at multiple time points from day 1 up to day 47 with a median of 11 samples per patient (range 2 to 17). In 11 patients all intended body regions were sampled (stool was missing in two patients and gastric secretion in two patients). The length of ICU stay and number of antibiotics administered during ICU stay was associated with loss of diversity in all investigated body sites. Taxonomic profiling showed a significant reduction of physiological members from the oral and fecal microbial community (e.g., Clostridiales, Bacteroidales, Faecalibacterium spp. etc.) after 2 weeks at the ICU. In contrast, Enterococcus spp. and Staphylococcus spp. were enriched in the gastric and fecal microbiota. Candida spp. dominated fungal communities of all body sites investigated. Staphylococcus aureus was associated with ITS positive, Candida spp. dominated samples throughout all body sites, while Pseudomonas aeruginosa was associated with ITS-negative samples.</jats:p> </jats:sec> <jats:sec> <jats:title>Conclusion</jats:title> <jats:p>The length of the ICU stay and the number of different antibiotics administered during the stay at the ICU are associated with severe intestinal dysbiosis, determined by loss of physiological microbes, decreased bacterial richness and domination of low-diversity fecal microbiota. Early colonization of Candida spp. might favor a co-existance of a Staphylococcus spp.-dominated microbiota in the ICU.</jats:p> </jats:sec> <jats:sec> <jats:title>Disclosures</jats:title> <jats:p>All authors: No reported disclosures.</jats:p> </jats:sec> 2575. Dramatic Time-Dependent Changes of Bacterial and Fungal Taxonomic Signatures in 4 Body Regions of ICU Patients Open Forum Infectious Diseases |
| spellingShingle | Wurm, Philipp, Halwachs-Wenzl, Bettina, Kashofer, Karl, von Lewinski, Dirk, Eisner, Florian, Krause, Robert, Gorkiewicz, Gregor, Hoegenauer, Christoph, Open Forum Infectious Diseases, 2575. Dramatic Time-Dependent Changes of Bacterial and Fungal Taxonomic Signatures in 4 Body Regions of ICU Patients, Infectious Diseases, Oncology |
| title | 2575. Dramatic Time-Dependent Changes of Bacterial and Fungal Taxonomic Signatures in 4 Body Regions of ICU Patients |
| title_full | 2575. Dramatic Time-Dependent Changes of Bacterial and Fungal Taxonomic Signatures in 4 Body Regions of ICU Patients |
| title_fullStr | 2575. Dramatic Time-Dependent Changes of Bacterial and Fungal Taxonomic Signatures in 4 Body Regions of ICU Patients |
| title_full_unstemmed | 2575. Dramatic Time-Dependent Changes of Bacterial and Fungal Taxonomic Signatures in 4 Body Regions of ICU Patients |
| title_short | 2575. Dramatic Time-Dependent Changes of Bacterial and Fungal Taxonomic Signatures in 4 Body Regions of ICU Patients |
| title_sort | 2575. dramatic time-dependent changes of bacterial and fungal taxonomic signatures in 4 body regions of icu patients |
| title_unstemmed | 2575. Dramatic Time-Dependent Changes of Bacterial and Fungal Taxonomic Signatures in 4 Body Regions of ICU Patients |
| topic | Infectious Diseases, Oncology |
| url | http://dx.doi.org/10.1093/ofid/ofz360.2253 |