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Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples
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| Zeitschriftentitel: | Bioinformatics |
|---|---|
| Personen und Körperschaften: | , , , , , |
| In: | Bioinformatics, 35, 2019, 17, S. 3140-3142 |
| Format: | E-Article |
| Sprache: | Englisch |
| veröffentlicht: |
Oxford University Press (OUP)
|
| Schlagwörter: |
| author_facet |
Streit, Marc Gratzl, Samuel Stitz, Holger Wernitznig, Andreas Zichner, Thomas Haslinger, Christian Streit, Marc Gratzl, Samuel Stitz, Holger Wernitznig, Andreas Zichner, Thomas Haslinger, Christian |
|---|---|
| author |
Streit, Marc Gratzl, Samuel Stitz, Holger Wernitznig, Andreas Zichner, Thomas Haslinger, Christian |
| spellingShingle |
Streit, Marc Gratzl, Samuel Stitz, Holger Wernitznig, Andreas Zichner, Thomas Haslinger, Christian Bioinformatics Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples Computational Mathematics Computational Theory and Mathematics Computer Science Applications Molecular Biology Biochemistry Statistics and Probability |
| author_sort |
streit, marc |
| spelling |
Streit, Marc Gratzl, Samuel Stitz, Holger Wernitznig, Andreas Zichner, Thomas Haslinger, Christian 1367-4803 1367-4811 Oxford University Press (OUP) Computational Mathematics Computational Theory and Mathematics Computer Science Applications Molecular Biology Biochemistry Statistics and Probability http://dx.doi.org/10.1093/bioinformatics/btz009 <jats:title>Abstract</jats:title> <jats:sec> <jats:title>Summary</jats:title> <jats:p>Ordino is a web-based analysis tool for cancer genomics that allows users to flexibly rank, filter and explore genes, cell lines and tissue samples based on pre-loaded data, including The Cancer Genome Atlas, the Cancer Cell Line Encyclopedia and manually uploaded information. Interactive tabular data visualization that facilitates the user-driven prioritization process forms a core component of Ordino. Detail views of selected items complement the exploration. Findings can be stored, shared and reproduced via the integrated session management.</jats:p> </jats:sec> <jats:sec> <jats:title>Availability and implementation</jats:title> <jats:p>Ordino is publicly available at https://ordino.caleydoapp.org. The source code is released at https://github.com/Caleydo/ordino under the Mozilla Public License 2.0.</jats:p> </jats:sec> <jats:sec> <jats:title>Supplementary information</jats:title> <jats:p>Supplementary data are available at Bioinformatics online.</jats:p> </jats:sec> Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples Bioinformatics |
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Bioinformatics |
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49 |
| title |
Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples |
| title_unstemmed |
Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples |
| title_full |
Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples |
| title_fullStr |
Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples |
| title_full_unstemmed |
Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples |
| title_short |
Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples |
| title_sort |
ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples |
| topic |
Computational Mathematics Computational Theory and Mathematics Computer Science Applications Molecular Biology Biochemistry Statistics and Probability |
| url |
http://dx.doi.org/10.1093/bioinformatics/btz009 |
| publishDate |
2019 |
| physical |
3140-3142 |
| description |
<jats:title>Abstract</jats:title>
<jats:sec>
<jats:title>Summary</jats:title>
<jats:p>Ordino is a web-based analysis tool for cancer genomics that allows users to flexibly rank, filter and explore genes, cell lines and tissue samples based on pre-loaded data, including The Cancer Genome Atlas, the Cancer Cell Line Encyclopedia and manually uploaded information. Interactive tabular data visualization that facilitates the user-driven prioritization process forms a core component of Ordino. Detail views of selected items complement the exploration. Findings can be stored, shared and reproduced via the integrated session management.</jats:p>
</jats:sec>
<jats:sec>
<jats:title>Availability and implementation</jats:title>
<jats:p>Ordino is publicly available at https://ordino.caleydoapp.org. The source code is released at https://github.com/Caleydo/ordino under the Mozilla Public License 2.0.</jats:p>
</jats:sec>
<jats:sec>
<jats:title>Supplementary information</jats:title>
<jats:p>Supplementary data are available at Bioinformatics online.</jats:p>
</jats:sec> |
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| author | Streit, Marc, Gratzl, Samuel, Stitz, Holger, Wernitznig, Andreas, Zichner, Thomas, Haslinger, Christian |
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| description | <jats:title>Abstract</jats:title> <jats:sec> <jats:title>Summary</jats:title> <jats:p>Ordino is a web-based analysis tool for cancer genomics that allows users to flexibly rank, filter and explore genes, cell lines and tissue samples based on pre-loaded data, including The Cancer Genome Atlas, the Cancer Cell Line Encyclopedia and manually uploaded information. Interactive tabular data visualization that facilitates the user-driven prioritization process forms a core component of Ordino. Detail views of selected items complement the exploration. Findings can be stored, shared and reproduced via the integrated session management.</jats:p> </jats:sec> <jats:sec> <jats:title>Availability and implementation</jats:title> <jats:p>Ordino is publicly available at https://ordino.caleydoapp.org. The source code is released at https://github.com/Caleydo/ordino under the Mozilla Public License 2.0.</jats:p> </jats:sec> <jats:sec> <jats:title>Supplementary information</jats:title> <jats:p>Supplementary data are available at Bioinformatics online.</jats:p> </jats:sec> |
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| spelling | Streit, Marc Gratzl, Samuel Stitz, Holger Wernitznig, Andreas Zichner, Thomas Haslinger, Christian 1367-4803 1367-4811 Oxford University Press (OUP) Computational Mathematics Computational Theory and Mathematics Computer Science Applications Molecular Biology Biochemistry Statistics and Probability http://dx.doi.org/10.1093/bioinformatics/btz009 <jats:title>Abstract</jats:title> <jats:sec> <jats:title>Summary</jats:title> <jats:p>Ordino is a web-based analysis tool for cancer genomics that allows users to flexibly rank, filter and explore genes, cell lines and tissue samples based on pre-loaded data, including The Cancer Genome Atlas, the Cancer Cell Line Encyclopedia and manually uploaded information. Interactive tabular data visualization that facilitates the user-driven prioritization process forms a core component of Ordino. Detail views of selected items complement the exploration. Findings can be stored, shared and reproduced via the integrated session management.</jats:p> </jats:sec> <jats:sec> <jats:title>Availability and implementation</jats:title> <jats:p>Ordino is publicly available at https://ordino.caleydoapp.org. The source code is released at https://github.com/Caleydo/ordino under the Mozilla Public License 2.0.</jats:p> </jats:sec> <jats:sec> <jats:title>Supplementary information</jats:title> <jats:p>Supplementary data are available at Bioinformatics online.</jats:p> </jats:sec> Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples Bioinformatics |
| spellingShingle | Streit, Marc, Gratzl, Samuel, Stitz, Holger, Wernitznig, Andreas, Zichner, Thomas, Haslinger, Christian, Bioinformatics, Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples, Computational Mathematics, Computational Theory and Mathematics, Computer Science Applications, Molecular Biology, Biochemistry, Statistics and Probability |
| title | Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples |
| title_full | Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples |
| title_fullStr | Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples |
| title_full_unstemmed | Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples |
| title_short | Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples |
| title_sort | ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples |
| title_unstemmed | Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples |
| topic | Computational Mathematics, Computational Theory and Mathematics, Computer Science Applications, Molecular Biology, Biochemistry, Statistics and Probability |
| url | http://dx.doi.org/10.1093/bioinformatics/btz009 |