Westsächsische Hochschule Zwickau

A comprehensive assessment of RNA-seq protocols for degraded and low-quantity samples

by Schuierer, Sven, Carbone, Walter, Knehr, Judith, Petitjean, Virginie, Fernandez, Anita, Sultan, Marc, Roma, Guglielmo
Published in BMC Genomics (2017)

Influence of RNA extraction methods and library selection schemes on RNA-seq data

by Sultan, Marc, Amstislavskiy, Vyacheslav, Risch, Thomas, Schuette, Moritz, Dökel, Simon, Ralser, Meryem, Balzereit, Daniela, Lehrach, Hans, Yaspo, Marie-Laure
Published in BMC Genomics (2014)

Gene expression variation in Down's syndrome mice allows prioritization of candidate genes

by Sultan, Marc, Piccini, Ilaria, Balzereit, Daniela, Herwig, Ralf, Saran, Nidhi G, Lehrach, Hans, Reeves, Roger H, Yaspo, Marie-Laure
Published in Genome Biol (2007)

Investigation of heart proteome of different consomic mouse strains. Testing the effect of polymorphisms on the proteome-wide trans-variation of proteins

by Forler, Stefanie, Klein, Oliver, Köhler, Sebastian, Robinson, Peter N., Witt, Henning, Sultan, Marc, Eravci, Murat, Regitz-Zagrosek, Vera, Lehrach, Hans, Klose, Joachim
Published in EuPA Open Proteomics (2015)

The BTB and CNC Homology 1 (BACH1) Target Genes Are Involved in the Oxidative Stress Response and in Control of the Cell Cycle

by Warnatz, Hans-Jörg, Schmidt, Dominic, Manke, Thomas, Piccini, Ilaria, Sultan, Marc, Borodina, Tatiana, Balzereit, Daniela, Wruck, Wasco, Soldatov, Alexey, Vingron, Martin, Lehrach, Hans, Yaspo, Marie-Laure
Published in Journal of Biological Chemistry (2011)

Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments

by Richard, Hugues, Schulz, Marcel H., Sultan, Marc, Nürnberger, Asja, Schrinner, Sabine, Balzereit, Daniela, Dagand, Emilie, Rasche, Axel, Lehrach, Hans, Vingron, Martin, Haas, Stefan A., Yaspo, Marie-Laure
Published in Nucleic Acids Research (2010)

Novel mutation in the CHST6 gene causes macular corneal dystrophy in a black South African family

by Carstens, Nadia, Williams, Susan, Goolam, Saadiah, Carmichael, Trevor, Cheung, Ming Sin, Büchmann-Møller, Stine, Sultan, Marc, Staedtler, Frank, Zou, Chao, Swart, Peter, Rice, Dennis S., Lacoste, Arnaud, Paes, Kim, Ramsay, Michèle
Published in BMC Medical Genetics (2016)

Comparative Analysis and Modeling of the Severity of Steatohepatitis in DDC-Treated Mouse Strains

by Pandey, Vikash, Sultan, Marc, Kashofer, Karl, Ralser, Meryem, Amstislavskiy, Vyacheslav, Starmann, Julia, Osprian, Ingrid, Grimm, Christina, Hache, Hendrik, Yaspo, Marie-Laure, Sültmann, Holger, Trauner, Michael, Denk, Helmut, Zatloukal, Kurt, Lehrach, Hans, Wierling, Christoph
Published in PLoS ONE (2014)

Analysis of the DNA-Binding Profile and Function of TALE Homeoproteins Reveals Their Specialization and Specific Interactions with Hox Genes/Proteins

by Penkov, Dmitry, San Martín, Daniel Mateos, Fernandez-Díaz, Luis C., Rosselló, Catalina A., Torroja, Carlos, Sánchez-Cabo, Fátima, Warnatz, H.J., Sultan, Marc, Yaspo, Marie L., Gabrieli, Arianna, Tkachuk, Vsevolod, Brendolan, Andrea, Blasi, Francesco, Torres, Miguel
Published in Cell Reports (2013)

Antimalarial Activity of KAF156 in Falciparum and Vivax Malaria

by White, Nicholas J., Duong, Tran T., Uthaisin, Chirapong, Nosten, François, Phyo, Aung P., Hanboonkunupakarn, Borimas, Pukrittayakamee, Sasithon, Jittamala, Podjanee, Chuthasmit, Kittiphum, Cheung, Ming S., Feng, Yiyan, Li, Ruobing, Magnusson, Baldur, Sultan, Marc, Wieser, Daniela, Xun, Xiaolei, Zhao, Rong, Diagana, Thierry T., Pertel, Peter, Leong, F. Joel
Published in New England Journal of Medicine (2016)

ICGC PedBrain - dissecting the genomic complexity underlying medulloblastoma using whole-genome sequencing

by Jäger, Natalie, Jones, David TW, Kool, Marcel, Zichner, Thomas, Hutter, Barbara, Sultan, Marc, Cho, Yoon-Jae, Pugh, Trevor J, Hovestadt, Volker, Stütz, Adrian M, Rausch, Tobias, Warnatz, Hans-Jörg, Brors, Benedikt, Northcott, Paul A, Taylor, Michael D, Meyerson, Matthew, Pomeroy, Scott L, Yaspo, Marie-Laure, Korbel, Jan O, Korshunov, Andrey, Eils, Roland, Pfister, Stefan M, Lichter, Peter
Published in BMC Proceedings (2012)

Duplicated Enhancer Region Increases Expression of CTSB and Segregates with Keratolytic Winter Erythema in South African and Norwegian Families

by Ngcungcu, Thandiswa, Oti, Martin, Sitek, Jan C., Haukanes, Bjørn I., Linghu, Bolan, Bruccoleri, Robert, Stokowy, Tomasz, Oakeley, Edward J., Yang, Fan, Zhu, Jiang, Sultan, Marc, Schalkwijk, Joost, van Vlijmen-Willems, Ivonne M.J.J., von der Lippe, Charlotte, Brunner, Han G., Ersland, Kari M., Grayson, Wayne, Buechmann-Moller, Stine, Sundnes, Olav, Nirmala, Nanguneri, Morgan, Thomas M., van Bokhoven, Hans, Steen, Vidar M., Hull, Peter R., Szustakowski, Joseph, Staedtler, Frank, Zhou, Huiqing, Fiskerstrand, Torunn, Ramsay, Michele
Published in The American Journal of Human Genetics (2017)

Hypermutation of the Inactive X Chromosome Is a Frequent Event in Cancer

by Jäger, Natalie, Schlesner, Matthias, Jones, David T.W., Raffel, Simon, Mallm, Jan-Philipp, Junge, Kristin M., Weichenhan, Dieter, Bauer, Tobias, Ishaque, Naveed, Kool, Marcel, Northcott, Paul A., Korshunov, Andrey, Drews, Ruben M., Koster, Jan, Versteeg, Rogier, Richter, Julia, Hummel, Michael, Mack, Stephen C., Taylor, Michael D., Witt, Hendrik, Swartman, Benedict, Schulte-Bockholt, Dietrich, Sultan, Marc, Yaspo, Marie-Laure, Lehrach, Hans, Hutter, Barbara, Brors, Benedikt, Wolf, Stephan, Plass, Christoph, Siebert, Reiner, Trumpp, Andreas, Rippe, Karsten, Lehmann, Irina, Lichter, Peter, Pfister, Stefan M., Eils, Roland
Published in Cell (2013)

Genomics and drug profiling of fatal TCF3-HLF−positive acute lymphoblastic leukemia identifies recurrent mutation patterns and therapeutic options

by Fischer, Ute, Forster, Michael, Rinaldi, Anna, Risch, Thomas, Sungalee, Stéphanie, Warnatz, Hans-Jörg, Bornhauser, Beat, Gombert, Michael, Kratsch, Christina, Stütz, Adrian M, Sultan, Marc, Tchinda, Joelle, Worth, Catherine L, Amstislavskiy, Vyacheslav, Badarinarayan, Nandini, Baruchel, André, Bartram, Thies, Basso, Giuseppe, Canpolat, Cengiz, Cario, Gunnar, Cavé, Hélène, Dakaj, Dardane, Delorenzi, Mauro, Dobay, Maria Pamela, Eckert, Cornelia, Ellinghaus, Eva, Eugster, Sabrina, Frismantas, Viktoras, Ginzel, Sebastian, Haas, Oskar A, Heidenreich, Olaf, Hemmrich-Stanisak, Georg, Hezaveh, Kebria, Höll, Jessica I, Hornhardt, Sabine, Husemann, Peter, Kachroo, Priyadarshini, Kratz, Christian P, Kronnie, Geertruy te, Marovca, Blerim, Niggli, Felix, McHardy, Alice C, Moorman, Anthony V, Panzer-Grümayer, Renate, Petersen, Britt S, Raeder, Benjamin, Ralser, Meryem, Rosenstiel, Philip, Schäfer, Daniel, Schrappe, Martin, Schreiber, Stefan, Schütte, Moritz, Stade, Björn, Thiele, Ralf, Weid, Nicolas von der, Vora, Ajay, Zaliova, Marketa, Zhang, Langhui, Zichner, Thomas, Zimmermann, Martin, Lehrach, Hans, Borkhardt, Arndt, Bourquin, Jean-Pierre, Franke, Andre, Korbel, Jan O, Stanulla, Martin, Yaspo, Marie-Laure
Published in Nature Genetics (2015)

Integrative Genomic Analyses Reveal an Androgen-Driven Somatic Alteration Landscape in Early-Onset Prostate Cancer

by Weischenfeldt, Joachim, Simon, Ronald, Feuerbach, Lars, Schlangen, Karin, Weichenhan, Dieter, Minner, Sarah, Wuttig, Daniela, Warnatz, Hans-Jörg, Stehr, Henning, Rausch, Tobias, Jäger, Natalie, Gu, Lei, Bogatyrova, Olga, Stütz, Adrian M., Claus, Rainer, Eils, Jürgen, Eils, Roland, Gerhäuser, Clarissa, Huang, Po-Hsien, Hutter, Barbara, Kabbe, Rolf, Lawerenz, Christian, Radomski, Sylwester, Bartholomae, Cynthia C., Fälth, Maria, Gade, Stephan, Schmidt, Manfred, Amschler, Nina, Haß, Thomas, Galal, Rami, Gjoni, Jovisa, Kuner, Ruprecht, Baer, Constance, Masser, Sawinee, von Kalle, Christof, Zichner, Thomas, Benes, Vladimir, Raeder, Benjamin, Mader, Malte, Amstislavskiy, Vyacheslav, Avci, Meryem, Lehrach, Hans, Parkhomchuk, Dmitri, Sultan, Marc, Burkhardt, Lia, Graefen, Markus, Huland, Hartwig, Kluth, Martina, Krohn, Antje, Sirma, Hüseyin, Stumm, Laura, Steurer, Stefan, Grupp, Katharina, Sültmann, Holger, Sauter, Guido, Plass, Christoph, Brors, Benedikt, Yaspo, Marie-Laure, Korbel, Jan O., Schlomm, Thorsten
Published in Cancer Cell (2013)

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

by Diez-Roux, Graciana, Banfi, Sandro, Sultan, Marc, Geffers, Lars, Anand, Santosh, Rozado, David, Magen, Alon, Canidio, Elena, Pagani, Massimiliano, Peluso, Ivana, Lin-Marq, Nathalie, Koch, Muriel, Bilio, Marchesa, Cantiello, Immacolata, Verde, Roberta, De Masi, Cristian, Bianchi, Salvatore A., Cicchini, Juliette, Perroud, Elodie, Mehmeti, Shprese, Dagand, Emilie, Schrinner, Sabine, Nürnberger, Asja, Schmidt, Katja, Metz, Katja, Zwingmann, Christina, Brieske, Norbert, Springer, Cindy, Hernandez, Ana Martinez, Herzog, Sarah, Grabbe, Frauke, Sieverding, Cornelia, Fischer, Barbara, Schrader, Kathrin, Brockmeyer, Maren, Dettmer, Sarah, Helbig, Christin, Alunni, Violaine, Battaini, Marie-Annick, Mura, Carole, Henrichsen, Charlotte N., Garcia-Lopez, Raquel, Echevarria, Diego, Puelles, Eduardo, Garcia-Calero, Elena, Kruse, Stefan, Uhr, Markus, Kauck, Christine, Feng, Guangjie, Milyaev, Nestor, Ong, Chuang Kee, Kumar, Lalit, Lam, MeiSze, Semple, Colin A., Gyenesei, Attila, Mundlos, Stefan, Radelof, Uwe, Lehrach, Hans, Sarmientos, Paolo, Reymond, Alexandre, Davidson, Duncan R., Dollé, Pascal, Antonarakis, Stylianos E., Yaspo, Marie-Laure, Martinez, Salvador, Baldock, Richard A., Eichele, Gregor, Ballabio, Andrea
Published in PLoS Biology (2011)

Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells

by Chen, Lu, Ge, Bing, Casale, Francesco Paolo, Vasquez, Louella, Kwan, Tony, Garrido-Martín, Diego, Watt, Stephen, Yan, Ying, Kundu, Kousik, Ecker, Simone, Datta, Avik, Richardson, David, Burden, Frances, Mead, Daniel, Mann, Alice L., Fernandez, Jose Maria, Rowlston, Sophia, Wilder, Steven P., Farrow, Samantha, Shao, Xiaojian, Lambourne, John J., Redensek, Adriana, Albers, Cornelis A., Amstislavskiy, Vyacheslav, Ashford, Sofie, Berentsen, Kim, Bomba, Lorenzo, Bourque, Guillaume, Bujold, David, Busche, Stephan, Caron, Maxime, Chen, Shu-Huang, Cheung, Warren, Delaneau, Oliver, Dermitzakis, Emmanouil T., Elding, Heather, Colgiu, Irina, Bagger, Frederik O., Flicek, Paul, Habibi, Ehsan, Iotchkova, Valentina, Janssen-Megens, Eva, Kim, Bowon, Lehrach, Hans, Lowy, Ernesto, Mandoli, Amit, Matarese, Filomena, Maurano, Matthew T., Morris, John A., Pancaldi, Vera, Pourfarzad, Farzin, Rehnstrom, Karola, Rendon, Augusto, Risch, Thomas, Sharifi, Nilofar, Simon, Marie-Michelle, Sultan, Marc, Valencia, Alfonso, Walter, Klaudia, Wang, Shuang-Yin, Frontini, Mattia, Antonarakis, Stylianos E., Clarke, Laura, Yaspo, Marie-Laure, Beck, Stephan, Guigo, Roderic, Rico, Daniel, Martens, Joost H.A., Ouwehand, Willem H., Kuijpers, Taco W., Paul, Dirk S., Stunnenberg, Hendrik G., Stegle, Oliver, Downes, Kate, Pastinen, Tomi, Soranzo, Nicole
Published in Cell (2016)

Recurrent somatic alterations of FGFR1 and NTRK2 in pilocytic astrocytoma

by Jones, David T W, Hutter, Barbara, Jäger, Natalie, Korshunov, Andrey, Kool, Marcel, Warnatz, Hans-Jörg, Zichner, Thomas, Lambert, Sally R, Ryzhova, Marina, Quang, Dong Anh Khuong, Fontebasso, Adam M, Stütz, Adrian M, Hutter, Sonja, Zuckermann, Marc, Sturm, Dominik, Gronych, Jan, Lasitschka, Bärbel, Schmidt, Sabine, Şeker-Cin, Huriye, Witt, Hendrik, Sultan, Marc, Ralser, Meryem, Northcott, Paul A, Hovestadt, Volker, Bender, Sebastian, Pfaff, Elke, Stark, Sebastian, Faury, Damien, Schwartzentruber, Jeremy, Majewski, Jacek, Weber, Ursula D, Zapatka, Marc, Raeder, Benjamin, Schlesner, Matthias, Worth, Catherine L, Bartholomae, Cynthia C, von Kalle, Christof, Imbusch, Charles D, Radomski, Sylwester, Lawerenz, Chris, van Sluis, Peter, Koster, Jan, Volckmann, Richard, Versteeg, Rogier, Lehrach, Hans, Monoranu, Camelia, Winkler, Beate, Unterberg, Andreas, Herold-Mende, Christel, Milde, Till, Kulozik, Andreas E, Ebinger, Martin, Schuhmann, Martin U, Cho, Yoon-Jae, Pomeroy, Scott L, von Deimling, Andreas, Witt, Olaf, Taylor, Michael D, Wolf, Stephan, Karajannis, Matthias A, Eberhart, Charles G, Scheurlen, Wolfram, Hasselblatt, Martin, Ligon, Keith L, Kieran, Mark W, Korbel, Jan O, Yaspo, Marie-Laure, Brors, Benedikt, Felsberg, Jörg, Reifenberger, Guido, Collins, V Peter, Jabado, Nada, Eils, Roland, Lichter, Peter
Published in Nature Genetics (2013)