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1. 1
   online resource

   SRPRISM (Single Read Paired Read Indel Substitution Minimizer): an efficient aligner for assemblies with explicit guarantees

   by Morgulis, Aleksandr, Agarwala, Richa
   Published in GigaScience (2020)

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2. 2
   online resource

   Inverse inbreeding coefficient problems with an application to linkage analysis of recessive diseases in inbred populations

   by Agarwala, Richa, Biesecker, Leslie G., Schäffer, Alejandro A.
   Published in Discrete Applied Mathematics (2000)

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3. 3
   online resource

   Genome Sequence of the Banana Plant Growth-Promoting Rhizobacterium Pseudomonas fluorescens PS006

   by Gamez, Rocío M., Rodríguez, Fernando, Ramírez, Sandra, Gómez, Yolanda, Agarwala, Richa, Landsman, David, Mariño-Ramírez, Leonardo
   Published in Genome Announcements (2016)

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4. 4
   online resource

   Genome Sequence of the Banana Plant Growth-Promoting Rhizobacterium Bacillus amyloliquefaciens BS006

   by Gamez, Rocío M., Rodríguez, Fernando, Bernal, Johan F., Agarwala, Richa, Landsman, David, Mariño-Ramírez, Leonardo
   Published in Genome Announcements (2015)

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5. 5
   online resource

   Comparative Analysis of Genome Sequences of the Th2 Cytokine Region of Rabbit (Oryctolagus cuniculus) with those of Nine Different Species

   by Gertz, E. Michael, Agarwala, Richa, Mage, Rose G., Schäffer, Alejandro A.
   Published in Immunology and Immunogenetics Insights (2011)

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6. 6
   online resource

   PedHunter 2.0 and its usage to characterize the founder structure of the Old Order Amish of Lancaster County

   by Agarwala Richa, O'Connell Jeffrey R, Pollin Toni I, Lee Woei-Jyh, Schäffer Alejandro A
   Published in BMC Medical Genetics (2010)

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7. 7
   online resource

   PSI-BLAST pseudocounts and the minimum description length principle

   by Altschul, Stephen F., Gertz, E. Michael, Agarwala, Richa, Schäffer, Alejandro A., Yu, Yi-Kuo
   Published in Nucleic Acids Research (2009)

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8. 8
   online resource

   Database indexing for production MegaBLAST searches

   by Morgulis, Aleksandr, Coulouris, George, Raytselis, Yan, Madden, Thomas L., Agarwala, Richa, Schäffer, Alejandro A.
   Published in Bioinformatics (2008)

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9. 9
   online resource

   Application of dissociation curve analysis to radiation hybrid panel marker scoring: generation of a map of river buffalo (B. bubalis) chromosome 20

   by Schäffer Alejandro A, Agarwala Richa, Amaral M Elisabete J, Kochan Kelli J, Riggs Penny K
   Published in BMC Genomics (2008)

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10. 10
    online resource

    Retrieval accuracy, statistical significance and compositional similarity in protein sequence database searches

    by Yu, Yi-Kuo, Gertz, E. Michael, Agarwala, Richa, Schäffer, Alejandro A., Altschul, Stephen F.
    Published in Nucleic Acids Research (2006)

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11. 11
    online resource

    Composition-based statistics and translated nucleotide searches: Improving the TBLASTN module of BLAST

    by Schäffer Alejandro A, Agarwala Richa, Yu Yi-Kuo, Gertz E Michael, Altschul Stephen F
    Published in BMC Biology (2006)

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12. 12
    online resource

    A Fast and Scalable Radiation Hybrid Map Construction and Integration Strategy

    by Agarwala, Richa, Applegate, David L., Maglott, Donna, Schuler, Gregory D., Schäffer, Alejandro A.
    Published in Genome Research (2000)

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13. 13
    online resource

    Software for Constructing and Verifying Pedigrees within Large Genealogies and an Application to the Old Order Amish of Lancaster County

    by Agarwala, Richa, Biesecker, Leslie G., Hopkins, Katherine A., Francomano, Clair A., Schaffer, Alejandro A.
    Published in Genome Research (1998)

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14. 14
    online resource

    Genome Sequences of Multidrug-Resistant Salmonella enterica Serovar Paratyphi B (dT+) and Heidelberg Strains from the Colombian Poultry Chain

    by Donado-Godoy, Pilar, Bernal, Johan F., Rodríguez, Fernando, Gomez, Yolanda, Agarwala, Richa, Landsman, David, Mariño-Ramírez, Leonardo
    Published in Genome Announcements (2015)

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15. 15
    online resource

    Domain enhanced lookup time accelerated BLAST

    by Boratyn Grzegorz M, Schäffer Alejandro A, Agarwala Richa, Altschul Stephen F, Lipman David J, Madden Thomas L
    Published in Biology Direct (2012)

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16. 16
    online resource

    Novel Gene Acquisition on Carnivore Y Chromosomes

    by Murphy, William J, Wilkerson, Alison J. Pearks, Raudsepp, Terje, Agarwala, Richa, Schäffer, Alejandro A, Stanyon, Roscoe, Chowdhary, Bhanu P
    Published in PLoS Genetics (2006)

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17. 17
    online resource

    Novel Gene Acquisition on Carnivore Y Chromosomes

    by Murphy, William J., Pearks Wilkerson, Alison J., Raudsepp, Terje, Agarwala, Richa, Schaffer, Alejandro A., Stanyon, Roscoe, Chowdhary, Bhanu P
    Published in PLoS Genetics (2005)

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18. 18
    online resource

    Protein database searches using compositionally adjusted substitution matrices

    by Altschul, Stephen F., Wootton, John C., Gertz, E. Michael, Agarwala, Richa, Morgulis, Aleksandr, Schaffer, Alejandro A., Yu, Yi-Kuo
    Published in FEBS Journal (2005)

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19. 19
    online resource

    The Sox10Dom Mouse: Modeling the Genetic Variation of Waardenburg-Shah (WS4) Syndrome

    by Southard-Smith, E. Michelle, Angrist, Misha, Ellison, Jane S., Agarwala, Richa, Baxevanis, Andreas D., Chakravarti, Aravinda, Pavan, William J.
    Published in Genome Research (1999)

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20. 20
    online resource

    Whole-Genome Sequences of Two Campylobacter coli Isolates from the Antimicrobial Resistance Monitoring Program in Colombia

    by Bernal, Johan F., Donado-Godoy, Pilar, Valencia, María Fernanda, León, Maribel, Gómez, Yolanda, Rodríguez, Fernando, Agarwala, Richa, Landsman, David, Mariño-Ramírez, Leonardo
    Published in Genome Announcements (2016)

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